A Generic Program for Multistate Protein Design
نویسندگان
چکیده
منابع مشابه
A Generic Program for Multistate Protein Design
Some protein design tasks cannot be modeled by the traditional single state design strategy of finding a sequence that is optimal for a single fixed backbone. Such cases require multistate design, where a single sequence is threaded onto multiple backbones (states) and evaluated for its strengths and weaknesses on each backbone. For example, to design a protein that can switch between two speci...
متن کاملAn efficient algorithm for multistate protein design based on FASTER
Most of the methods that have been developed for computational protein design involve the selection of side-chain conformations in the context of a single, fixed main-chain structure. In contrast, multistate design (MSD) methods allow sequence selection to be driven by the energetic contributions of multiple structural or chemical states simultaneously. This methodology is expected to be useful...
متن کاملSPRINT: side-chain prediction inference toolbox for multistate protein design
UNLABELLED SPRINT is a software package that performs computational multistate protein design using state-of-the-art inference on probabilistic graphical models. The input to SPRINT is a list of protein structures, the rotamers modeled for each structure and the pre-calculated rotamer energies. Probabilistic inference is performed using the belief propagation or A* algorithms, and dead-end elim...
متن کاملinvestigating the feasibility of a proposed model for geometric design of deployable arch structures
deployable scissor type structures are composed of the so-called scissor-like elements (sles), which are connected to each other at an intermediate point through a pivotal connection and allow them to be folded into a compact bundle for storage or transport. several sles are connected to each other in order to form units with regular polygonal plan views. the sides and radii of the polygons are...
A Generic Program for Sequential Decision Processes
1 Motivation A generic program for a class of problems is a program which can be used to solve each problem in that class by suitably instantiating its parameters. The most celebrated example of a generic program is the algorithm of Aho, Hopcroft and Ullman for the algebraic path problem 1]. Here we have a single program, pa-rameterised by a number of operators, that solves numerous seemingly d...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: PLoS ONE
سال: 2011
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0020937